STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yliEPutative cyclic di-GMP phosphodiesterase YliE. (585 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.995
yegE_6
Putative diguanylate cyclase YegE.
 
 0.990
yegE_7
Putative diguanylate cyclase YegE.
 
 0.988
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.985
ydaM_4
Putative diguanylate cyclase YdaM.
 
 0.982
cph2_13
Phytochrome-like protein cph2.
 
 0.971
yegE_1
Putative diguanylate cyclase YegE.
 
 0.969
yegE_2
Putative diguanylate cyclase YegE.
 
 0.966
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.966
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.966
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.