Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yliEPutative cyclic di-GMP phosphodiesterase YliE. (585 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.960
barA_1
Signal transduction histidine-protein kinase BarA.
  
  
 0.944
ydaM_4
Putative diguanylate cyclase YdaM.
 
 
 0.934
yegE_6
Putative diguanylate cyclase YegE.
 
 
 0.930
yegE_7
Putative diguanylate cyclase YegE.
 
 
 0.917
yegE_1
Putative diguanylate cyclase YegE.
 
 
 0.905
cph2_3
Phytochrome-like protein cph2.
 
 
0.876
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.870
yegE_8
Putative diguanylate cyclase YegE.
 
 
0.869
yegE_3
Putative diguanylate cyclase YegE.
 
 
 0.859
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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