Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_8Cyclic di-GMP phosphodiesterase response regulator RpfG. (800 aa)    
Predicted Functional Partners:
ACWI_16720
Hypothetical protein.
       0.773
barA_2
Signal transduction histidine-protein kinase BarA.
 
   
 0.652
ydaM_4
Putative diguanylate cyclase YdaM.
 
 
0.622
ydaM_7
Putative diguanylate cyclase YdaM.
 
 
 
0.621
fliN
Flagellar motor switch protein FliN.
    
 
 0.606
prkC_1
Serine/threonine-protein kinase PrkC.
  
  
 0.595
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 0.566
yliE
Putative cyclic di-GMP phosphodiesterase YliE.
 
 
0.546
yedQ
Putative diguanylate cyclase YedQ.
 
 
0.523
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
  
 0.483
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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