Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ydcP_2Putative protease YdcP precursor. (409 aa)    
Predicted Functional Partners:
ACWI_17430
Putative O-methyltransferase.
  
 0.958
qorB
Quinone oxidoreductase 2.
   
 
 0.687
pcm
protein-L-isoaspartate O-methyltransferase.
  
   0.655
novP
Demethyldecarbamoylnovobiocin O-methyltransferase.
  
  
 0.633
ACWI_26710
macrocin-O-methyltransferase (TylF).
  
  
 0.633
hndC_1
NADP-reducing hydrogenase subunit HndC.
   
   0.619
hndC_2
NADP-reducing hydrogenase subunit HndC.
   
   0.619
rlmN
Putative dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
 
 0.606
ACWI_16820
Putative NAD(P)H nitroreductase.
  
 
 0.590
nuoI
NADH-quinone oxidoreductase subunit I.
  
   0.587
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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