Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
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Co-expression
Experiments
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[Homology]
Score
ACWI_19250Hypothetical protein. (148 aa)    
Predicted Functional Partners:
rsmD
Ribosomal RNA small subunit methyltransferase D.
  
    0.894
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.799
recG
ATP-dependent DNA helicase RecG.
     
 0.797
ACWI_19210
DAK2 domain protein.
 
     0.741
ACWI_19200
Hypothetical protein.
 
     0.709
ACWI_11670
Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM.
  
     0.638
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.594
ACWI_19260
Hypothetical protein; Conserved virulence factor B; Belongs to the CvfB family.
       0.565
nuoI
NADH-quinone oxidoreductase subunit I.
       0.565
prkC_2
Serine/threonine-protein kinase PrkC.
 
   
 0.547
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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