Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_19710Hypothetical protein. (600 aa)    
Predicted Functional Partners:
ACWI_18330
Hypothetical protein.
  
     0.738
pksJ
Polyketide synthase PksJ.
     
 0.679
uvsE
UV DNA damage endonuclease.
  
     0.645
ywqD_2
Tyrosine-protein kinase YwqD.
     
 0.590
cph2_5
Phytochrome-like protein cph2.
  
    0.572
era_1
GTPase Era.
  
     0.544
crtD
Hydroxyneurosporene desaturase.
  
   
 0.532
ACWI_20790
Hypothetical protein.
  
     0.484
yliE
Putative cyclic di-GMP phosphodiesterase YliE.
  
  
 0.457
era_2
GTPase Era.
  
     0.449
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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