Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ybhR_1Inner membrane transport permease YbhR. (246 aa)    
Predicted Functional Partners:
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.970
bmrR_1
Multidrug-efflux transporter 1 regulator.
 
  
 0.897
pksJ
Polyketide synthase PksJ.
  
  
 0.634
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.562
ACWI_20200
CAAX amino terminal protease self- immunity.
   
  
 0.542
tetD_1
Transposon Tn10 TetD protein.
  
     0.519
ACWI_19720
EcsC protein family protein.
       0.509
ACWI_19760
Hypothetical protein.
       0.501
appA
Oligopeptide-binding protein AppA precursor.
  
  
 0.499
ACWI_16560
Hypothetical protein.
  
     0.482
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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