braC_2 protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

braC_2

Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (374 aa)

Predicted Functional Partners:

livH_1

0.981

livH_2

0.981

ACWI_18090

0.980

livH_3

0.980

lptB_1

0.978

lptB_2

0.976

livF_1

0.974

livF_2

0.948

cph2_6

0.777

pdtaR

0.695

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_18090	braC_2	ACWI_18090	ACWI_20070	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.980
ACWI_18090	livF_1	ACWI_18090	ACWI_18070	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid transport ATP-binding protein LivF.	0.999
ACWI_18090	livF_2	ACWI_18090	ACWI_18800	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid transport ATP-binding protein LivF.	0.995
ACWI_18090	livH_1	ACWI_18090	ACWI_18100	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.	0.999
ACWI_18090	livH_2	ACWI_18090	ACWI_18770	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.	0.998
ACWI_18090	livH_3	ACWI_18090	ACWI_18780	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.	0.916
ACWI_18090	lptB_1	ACWI_18090	ACWI_18080	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	Lipopolysaccharide export system ATP-binding protein LptB.	0.999
ACWI_18090	lptB_2	ACWI_18090	ACWI_18790	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	Lipopolysaccharide export system ATP-binding protein LptB.	0.998
braC_2	ACWI_18090	ACWI_20070	ACWI_18090	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	0.980
braC_2	cph2_6	ACWI_20070	ACWI_20080	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	Phytochrome-like protein cph2.	0.777
braC_2	livF_1	ACWI_20070	ACWI_18070	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	High-affinity branched-chain amino acid transport ATP-binding protein LivF.	0.974
braC_2	livF_2	ACWI_20070	ACWI_18800	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	High-affinity branched-chain amino acid transport ATP-binding protein LivF.	0.948
braC_2	livH_1	ACWI_20070	ACWI_18100	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.	0.981
braC_2	livH_2	ACWI_20070	ACWI_18770	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.	0.981
braC_2	livH_3	ACWI_20070	ACWI_18780	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.	0.980
braC_2	lptB_1	ACWI_20070	ACWI_18080	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	Lipopolysaccharide export system ATP-binding protein LptB.	0.978
braC_2	lptB_2	ACWI_20070	ACWI_18790	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	Lipopolysaccharide export system ATP-binding protein LptB.	0.976
braC_2	pdtaR	ACWI_20070	ACWI_23830	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	Putative transcriptional regulatory protein pdtaR.	0.695
cph2_6	braC_2	ACWI_20080	ACWI_20070	Phytochrome-like protein cph2.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.777
livF_1	ACWI_18090	ACWI_18070	ACWI_18090	High-affinity branched-chain amino acid transport ATP-binding protein LivF.	Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.	0.999