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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCDCarnitine transport permease protein OpuCD. (213 aa)    
Predicted Functional Partners:
opuCC
Glycine betaine/carnitine/choline-binding protein OpuCC precursor.
 
 0.999
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 0.999
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
   
 0.609
purF
Amidophosphoribosyltransferase precursor; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
   
    0.586
ACWI_06080
CBS domain protein.
    
 0.568
ACWI_24600
Helix-turn-helix protein.
    
 0.539
metQ_1
Methionine-binding lipoprotein MetQ precursor; Belongs to the nlpA lipoprotein family.
  
 
  0.516
metQ_2
D-methionine-binding lipoprotein MetQ precursor; Belongs to the nlpA lipoprotein family.
  
 
  0.516
cph2_8
Phytochrome-like protein cph2.
       0.459
metI
D-methionine transport system permease protein MetI.
  
 
 
0.454
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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