STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCAGlycine betaine/carnitine/choline transport ATP-binding protein OpuCA. (314 aa)    
Predicted Functional Partners:
opuCD
Carnitine transport permease protein OpuCD.
 0.999
opuCC
Glycine betaine/carnitine/choline-binding protein OpuCC precursor.
 0.999
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
    
0.907
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the ABC transporter superfamily.
 
    
0.905
modB_1
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.888
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
      0.883
ACWI_24490
Putative multidrug export ATP-binding/permease protein.
 
     
0.830
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
      0.729
dppC
Dipeptide transport system permease protein DppC.
 
    
 0.641
ACWI_14490
Putative ABC transporter ATP-binding protein.
 
     
0.615
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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