STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeaPPutative diguanylate cyclase YeaP. (347 aa)    
Predicted Functional Partners:
cph2_3
Phytochrome-like protein cph2.
 0.928
barA_2
Signal transduction histidine-protein kinase BarA.
 0.926
cph2_10
Phytochrome-like protein cph2.
 0.898
cph2_1
Phytochrome-like protein cph2.
 0.892
barA_1
Signal transduction histidine-protein kinase BarA.
 
 0.892
cph2_11
Phytochrome-like protein cph2.
 
 
 0.842
cph2_9
Phytochrome-like protein cph2.
 
 0.840
cph2_5
Phytochrome-like protein cph2.
 0.824
yjcC
Putative membrane protein YjcC.
  
 
 0.818
yegE_3
Putative diguanylate cyclase YegE.
 
 0.812
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.