Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_20380Peptidase family S41. (488 aa)    
Predicted Functional Partners:
ACWI_16570
Hypothetical protein.
    
 
 0.745
ACWI_24910
Y_Y_Y domain protein.
  
 
 0.686
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 
 0.648
ACWI_09250
Hypothetical protein.
   
 
 0.602
inlA_2
internalin-A precursor.
   
 
 0.602
ACWI_23950
Hypothetical protein.
   
 
 0.602
ACWI_24110
Hypothetical protein.
   
 
 0.602
ACWI_33640
Collagen triple helix repeat (20 copies).
   
 
 0.602
ydeA
Putative protease YdeA.
 
   
 0.555
bmr3_2
Multidrug resistance protein 3.
  
   
 0.505
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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