ktrB protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ktrB

Ktr system potassium uptake protein B. (458 aa)

Predicted Functional Partners:

ktrA

0.994

ACWI_21350

0.777

ACWI_02040

0.667

trkA_1

0.667

trkA_2

0.667

trkA_3

0.667

trkA_4

0.667

ACWI_17920

0.667

trkA_5

0.667

rplT

0.572

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_02040	ktrB	ACWI_02040	ACWI_21370	Hypothetical protein.	Ktr system potassium uptake protein B.	0.667
ACWI_17920	ktrB	ACWI_17920	ACWI_21370	TrkA-N domain protein.	Ktr system potassium uptake protein B.	0.667
ACWI_21350	ktrA	ACWI_21350	ACWI_21360	Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ktr system potassium uptake protein A.	0.799
ACWI_21350	ktrB	ACWI_21350	ACWI_21370	Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ktr system potassium uptake protein B.	0.777
ACWI_21350	rplT	ACWI_21350	ACWI_21380	Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.915
ktrA	ACWI_21350	ACWI_21360	ACWI_21350	Ktr system potassium uptake protein A.	Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.799
ktrA	ktrB	ACWI_21360	ACWI_21370	Ktr system potassium uptake protein A.	Ktr system potassium uptake protein B.	0.994
ktrA	rplT	ACWI_21360	ACWI_21380	Ktr system potassium uptake protein A.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.551
ktrB	ACWI_02040	ACWI_21370	ACWI_02040	Ktr system potassium uptake protein B.	Hypothetical protein.	0.667
ktrB	ACWI_17920	ACWI_21370	ACWI_17920	Ktr system potassium uptake protein B.	TrkA-N domain protein.	0.667
ktrB	ACWI_21350	ACWI_21370	ACWI_21350	Ktr system potassium uptake protein B.	Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.777
ktrB	ktrA	ACWI_21370	ACWI_21360	Ktr system potassium uptake protein B.	Ktr system potassium uptake protein A.	0.994
ktrB	rplT	ACWI_21370	ACWI_21380	Ktr system potassium uptake protein B.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.572
ktrB	trkA_1	ACWI_21370	ACWI_16140	Ktr system potassium uptake protein B.	Trk system potassium uptake protein TrkA.	0.667
ktrB	trkA_2	ACWI_21370	ACWI_16150	Ktr system potassium uptake protein B.	Trk system potassium uptake protein TrkA.	0.667
ktrB	trkA_3	ACWI_21370	ACWI_16520	Ktr system potassium uptake protein B.	Trk system potassium uptake protein TrkA.	0.667
ktrB	trkA_4	ACWI_21370	ACWI_16530	Ktr system potassium uptake protein B.	Trk system potassium uptake protein TrkA.	0.667
ktrB	trkA_5	ACWI_21370	ACWI_22830	Ktr system potassium uptake protein B.	Trk system potassium uptake protein TrkA.	0.667
rplT	ACWI_21350	ACWI_21380	ACWI_21350	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.915
rplT	ktrA	ACWI_21380	ACWI_21360	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ktr system potassium uptake protein A.	0.551