rpmI protein (Acetobacterium wieringae) - STRING interaction network

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second shell of interactors

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gene neighborhood

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Score

rpmI

50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (67 aa)

Predicted Functional Partners:

rplT

0.998

rpsF

0.992

rpsP

0.990

rpsR

0.990

rplS

0.989

rplW

0.989

rpmJ

0.989

rplM

0.989

rpsB

0.989

rplD

0.988

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplM	ACWI_05660	ACWI_05990	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplD	rplS	ACWI_05660	ACWI_00350	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.993
rplD	rplT	ACWI_05660	ACWI_21380	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.994
rplD	rplW	ACWI_05660	ACWI_05670	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplD	rpmI	ACWI_05660	ACWI_21390	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.988
rplD	rpmJ	ACWI_05660	ACWI_05890	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.993
rplD	rpsB	ACWI_05660	ACWI_29430	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rplD	rpsF	ACWI_05660	ACWI_13350	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.988
rplD	rpsP	ACWI_05660	ACWI_00310	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.988
rplD	rpsR	ACWI_05660	ACWI_13370	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.988
rplM	rplD	ACWI_05990	ACWI_05660	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.998
rplM	rplS	ACWI_05990	ACWI_00350	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
rplM	rplT	ACWI_05990	ACWI_21380	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplM	rplW	ACWI_05990	ACWI_05670	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.998
rplM	rpmI	ACWI_05990	ACWI_21390	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.989
rplM	rpmJ	ACWI_05990	ACWI_05890	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.993
rplM	rpsB	ACWI_05990	ACWI_29430	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.994
rplM	rpsF	ACWI_05990	ACWI_13350	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.990
rplM	rpsP	ACWI_05990	ACWI_00310	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rplM	rpsR	ACWI_05990	ACWI_13370	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.991