STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flrFlavoredoxin. (196 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase PksJ.
    
 0.817
albA_1
Albonoursin synthase.
 
 
 0.747
ACWI_10190
Hypothetical protein.
  
 
 0.703
sfrB_1
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 
 0.661
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 
 0.661
pyrK
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit.
 
 
  0.577
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.576
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.562
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
  0.556
lgrD
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
    
  0.545
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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