STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabR_1HTH-type transcriptional regulatory protein GabR. (471 aa)    
Predicted Functional Partners:
arnE_1
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE.
 
   
 0.639
ACWI_08320
Putative GTP cyclohydrolase 1 type 2; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.521
pksJ
Polyketide synthase PksJ.
  
  
 0.481
ACWI_21100
Hypothetical protein.
    
   0.456
rsxB_4
Electron transport complex subunit RsxB.
    
   0.444
rsxB_5
Electron transport complex subunit RsxB.
    
   0.444
rsxB_6
Electron transport complex subunit RsxB.
    
   0.444
nifJ
Pyruvate-flavodoxin oxidoreductase.
       0.403
ACWI_28770
DNA-binding transcriptional regulator AraC.
 
   
 0.403
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.