Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yrbGInner membrane protein YrbG. (317 aa)    
Predicted Functional Partners:
arsA_2
Arsenical pump-driving ATPase.
  
   0.644
arsA_1
Arsenical pump-driving ATPase.
   
   0.616
arsA_3
Arsenical pump-driving ATPase.
   
   0.616
sadH
Putative oxidoreductase SadH; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
   0.553
ACWI_15370
Putative oxidoreductase.
    
   0.553
polS
Sorbitol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
   0.553
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.481
fruA
PTS system fructose-specific EIIABC component.
       0.471
nhaK
Sodium, potassium, lithium and rubidium/H(+) antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
   
 
 0.463
nhaP_1
Na(+)/H(+) antiporter NhaP.
   
 
 0.463
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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