Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhdG_2Putative amino acid permease YhdG. (494 aa)    
Predicted Functional Partners:
apu
Amylopullulanase precursor; Belongs to the glycosyl hydrolase 13 family.
  
 0.811
pksJ
Polyketide synthase PksJ.
  
 
 0.789
ACWI_01890
Hypothetical protein.
  
 0.770
barA_1
Signal transduction histidine-protein kinase BarA.
 
  
 0.730
adhB_1
Alcohol dehydrogenase 2.
 
 
 0.719
barA_2
Signal transduction histidine-protein kinase BarA.
 
  
 0.674
arsA_2
Arsenical pump-driving ATPase.
 
 
 0.671
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.663
argD_3
Acetylornithine aminotransferase.
 
 
 0.661
phoR_5
Alkaline phosphatase synthesis sensor protein PhoR.
 
 
  
 0.636
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.