pspE_3 protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pspE_3

Thiosulfate sulfurtransferase PspE precursor. (309 aa)

Predicted Functional Partners:

cdr_4

0.919

ACWI_22220

0.888

ACWI_22280

0.867

cdr_2

0.840

ACWI_22200

0.839

sfrB_1

0.813

sfrB_2

0.813

ssuA

0.797

ssuC_3

0.778

purT

0.774

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_22200	ACWI_22220	ACWI_22200	ACWI_22220	Putative inner membrane protein.	Dolichyl-phosphate-mannose-protein mannosyltransferase.	0.740
ACWI_22200	ACWI_22280	ACWI_22200	ACWI_22280	Putative inner membrane protein.	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	0.870
ACWI_22200	cdr_2	ACWI_22200	ACWI_22190	Putative inner membrane protein.	Coenzyme A disulfide reductase.	0.667
ACWI_22200	cdr_4	ACWI_22200	ACWI_29960	Putative inner membrane protein.	Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.	0.712
ACWI_22200	pspE_3	ACWI_22200	ACWI_22210	Putative inner membrane protein.	Thiosulfate sulfurtransferase PspE precursor.	0.839
ACWI_22200	purT	ACWI_22200	ACWI_22260	Putative inner membrane protein.	Phosphoribosylglycinamide formyltransferase 2.	0.600
ACWI_22200	ssuA	ACWI_22200	ACWI_22250	Putative inner membrane protein.	Putative aliphatic sulfonates-binding protein precursor.	0.667
ACWI_22200	ssuC_3	ACWI_22200	ACWI_22240	Putative inner membrane protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.623
ACWI_22220	ACWI_22200	ACWI_22220	ACWI_22200	Dolichyl-phosphate-mannose-protein mannosyltransferase.	Putative inner membrane protein.	0.740
ACWI_22220	ACWI_22280	ACWI_22220	ACWI_22280	Dolichyl-phosphate-mannose-protein mannosyltransferase.	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	0.758
ACWI_22220	pspE_3	ACWI_22220	ACWI_22210	Dolichyl-phosphate-mannose-protein mannosyltransferase.	Thiosulfate sulfurtransferase PspE precursor.	0.888
ACWI_22220	purT	ACWI_22220	ACWI_22260	Dolichyl-phosphate-mannose-protein mannosyltransferase.	Phosphoribosylglycinamide formyltransferase 2.	0.795
ACWI_22220	ssuA	ACWI_22220	ACWI_22250	Dolichyl-phosphate-mannose-protein mannosyltransferase.	Putative aliphatic sulfonates-binding protein precursor.	0.774
ACWI_22220	ssuC_3	ACWI_22220	ACWI_22240	Dolichyl-phosphate-mannose-protein mannosyltransferase.	Putative aliphatic sulfonates transport permease protein SsuC.	0.690
ACWI_22280	ACWI_22200	ACWI_22280	ACWI_22200	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	Putative inner membrane protein.	0.870
ACWI_22280	ACWI_22220	ACWI_22280	ACWI_22220	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	Dolichyl-phosphate-mannose-protein mannosyltransferase.	0.758
ACWI_22280	cdr_2	ACWI_22280	ACWI_22190	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	Coenzyme A disulfide reductase.	0.708
ACWI_22280	cdr_4	ACWI_22280	ACWI_29960	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.	0.941
ACWI_22280	pspE_3	ACWI_22280	ACWI_22210	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	Thiosulfate sulfurtransferase PspE precursor.	0.867
ACWI_22280	purT	ACWI_22280	ACWI_22260	SirA-like protein; Belongs to the sulfur carrier protein TusA family.	Phosphoribosylglycinamide formyltransferase 2.	0.893