STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysL_1HTH-type transcriptional regulator CysL; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
ACWI_22300
Putative inner membrane protein.
 
     0.819
ACWI_22310
Putative inner membrane protein.
 
     0.810
ACWI_22280
SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
   
 0.751
gltC_1
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.741
gltR
HTH-type transcriptional regulator GltR; Belongs to the LysR transcriptional regulatory family.
  
     0.704
cynR_2
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.692
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.679
pspE_3
Thiosulfate sulfurtransferase PspE precursor.
  
   
 0.668
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.633
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.631
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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