Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mepM_3Murein DD-endopeptidase MepM. (751 aa)    
Predicted Functional Partners:
envC_2
Murein hydrolase activator EnvC precursor.
 
 
 
0.770
pbpF
Penicillin-binding protein 1F.
  
 
 
 0.695
ACWI_10930
Hypothetical protein.
    
 
 0.645
pgaC
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
     
 0.548
ACWI_23290
Transposase DDE domain protein.
       0.495
wcaJ_3
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
     
 0.420
wbbL
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
     
 0.417
envC_1
Murein hydrolase activator EnvC precursor.
 
   
0.408
ACWI_23300
N-acetylmuramoyl-l-alanine amidase I.
 
    
0.405
mepM_4
Murein DD-endopeptidase MepM.
 
   
0.403
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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