Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsGType II secretion system protein G precursor. (165 aa)    
Predicted Functional Partners:
epsF_2
Type II secretion system protein F.
 
  
 0.902
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.859
epsE_2
Type II secretion system protein E.
 
  
 0.833
epsF_1
Type II secretion system protein F.
 
  
 0.789
gspE
Putative type II secretion system protein E.
 
  
 0.759
ACWI_23610
Hypothetical protein.
  
  
 0.673
ACWI_23590
Hypothetical protein; Prokaryotic N-terminal methylation motif.
  
  
0.662
xcpT
Type II secretion system protein G precursor.
 
  
 0.643
ACWI_27980
ComEC family competence protein.
   
  
 0.609
comEA
ComE operon protein 1.
   
  
 0.605
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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