Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdhFFormate dehydrogenase H. (897 aa)    
Predicted Functional Partners:
hndC_2
NADP-reducing hydrogenase subunit HndC.
 
 0.991
hndC_1
NADP-reducing hydrogenase subunit HndC.
 
 0.972
padI
NADH-dependent phenylglyoxylate dehydrogenase subunit beta.
 
 
 0.962
cinA_2
Putative competence-damage inducible protein.
    
 0.944
nasB
Assimilatory nitrate reductase electron transfer subunit.
 
  
 0.923
sfrB_1
NADPH-Fe(3+) oxidoreductase subunit beta.
    
0.914
cooS1_1
Carbon monoxide dehydrogenase 1.
    
 0.913
cooS1_2
Carbon monoxide dehydrogenase 1.
    
 0.913
fhs_3
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.912
fhs_1
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.905
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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