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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedKPutative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. (216 aa)    
Predicted Functional Partners:
xerC_1
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
  
 0.541
ACWI_14230
Hypothetical protein.
  
  
 0.535
ACWI_24550
Hypothetical protein.
       0.533
int-Tn_1
Transposase from transposon Tn916; Belongs to the 'phage' integrase family.
   
  
 0.473
xerD_1
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.473
int-Tn_2
Transposase from transposon Tn916.
   
  
 0.473
xerD_2
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.473
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.473
xerD_4
Tyrosine recombinase XerD.
   
  
 0.473
xerC_2
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
   
  
 0.473
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.