STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_24900Clostridial hydrophobic W. (667 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase PksJ.
  
  
 0.719
ACWI_26760
Hypothetical protein.
  
     0.702
apu
Amylopullulanase precursor; Belongs to the glycosyl hydrolase 13 family.
    
 0.606
ACWI_03780
Clostridial hydrophobic W.
 
 
 
0.571
ACWI_24910
Y_Y_Y domain protein.
    
 0.532
cgkA
Kappa-carrageenase precursor.
 
  
0.504
ygeX
Diaminopropionate ammonia-lyase.
   
 0.494
tdcB
L-threonine dehydratase catabolic TdcB; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
   
 0.494
vanYB_2
D-alanyl-D-alanine carboxypeptidase.
  
 
  0.493
ACWI_06040
Hypothetical protein.
    
 0.464
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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