Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pduV_1Propanediol utilization protein PduV; Belongs to the EutP/PduV family. (155 aa)    
Predicted Functional Partners:
pduU
Propanediol utilization protein PduU.
 
  
 0.965
eutL
Ethanolamine utilization protein EutL.
 
   
 0.829
hscA
Chaperone protein HscA.
 
  
 0.818
ccmL
Carbon dioxide concentrating mechanism protein CcmL.
 
   
 0.745
ACWI_25710
BMC domain protein.
 
  
 0.736
pduA_1
Propanediol utilization protein PduA.
 
  
 0.683
pduA_2
Propanediol utilization protein PduA.
 
  
 0.670
ACWI_31790
BMC domain protein.
 
     0.580
mtnK_2
Methylthioribose kinase.
     
 0.552
ACWI_25600
Dehydratase medium subunit.
 
   
 0.476
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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