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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabR_2HTH-type transcriptional regulatory protein GabR. (464 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase PksJ.
  
 
 0.813
pheA
P-protein.
    
 0.761
ACWI_25390
Hypothetical protein.
    
 0.761
pdxK
Pyridoxine kinase; Belongs to the pyridoxine kinase family.
  
  
 0.634
lpd_4
Dihydrolipoyl dehydrogenase.
    
  0.590
ACWI_21100
Hypothetical protein.
    
   0.589
tyrB
Aromatic-amino-acid aminotransferase.
  
 0.577
echA8
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.562
rsxB_4
Electron transport complex subunit RsxB.
    
   0.551
rsxB_5
Electron transport complex subunit RsxB.
    
   0.551
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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