Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gabR_2HTH-type transcriptional regulatory protein GabR. (464 aa)    
Predicted Functional Partners:
pdxK
Pyridoxine kinase; Belongs to the pyridoxine kinase family.
  
  
 0.678
xcpT
Type II secretion system protein G precursor.
       0.528
ACWI_25230
Hypothetical protein.
  
    0.522
ACWI_08320
Putative GTP cyclohydrolase 1 type 2; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.521
ACWI_25240
Hypothetical protein.
       0.521
ACWI_25250
Hypothetical protein.
       0.521
ACWI_25260
Hypothetical protein.
       0.521
ACWI_25270
Hypothetical protein.
       0.521
ACWI_25280
Fimbrial assembly protein (PilN).
       0.521
ACWI_25290
Hypothetical protein.
       0.521
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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