Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rimK_2Ribosomal protein S6--L-glutamate ligase; Belongs to the RimK family. (305 aa)    
Predicted Functional Partners:
rimK_1
Ribosomal protein S6--L-glutamate ligase.
 
  
 
0.977
ACWI_25440
GH3 auxin-responsive promoter.
     0.823
ACWI_25450
GH3 auxin-responsive promoter.
     0.586
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.570
ACWI_25500
Uracil DNA glycosylase superfamily protein.
       0.558
ACWI_33630
Kelch motif protein.
  
     0.526
ACWI_25460
Putative ABC transporter ATP-binding protein.
     
 0.464
ACWI_25470
Putative ABC transporter ATP-binding protein.
     
 0.464
doeB
N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase.
 
     0.434
barA_1
Signal transduction histidine-protein kinase BarA.
     
 0.431
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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