STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdA_2Sensor histidine kinase YpdA. (417 aa)    
Predicted Functional Partners:
cheY_2
Chemotaxis protein CheY.
 
 0.992
ydaM_4
Putative diguanylate cyclase YdaM.
  
 
0.913
lytR_1
Sensory transduction protein LytR.
 
 
 0.911
lytR_3
Sensory transduction protein LytR.
 
 
 0.911
yedQ
Putative diguanylate cyclase YedQ.
  
 
 0.876
lytR_2
Sensory transduction protein LytR.
 
 
 0.875
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.823
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.822
prkC_1
Serine/threonine-protein kinase PrkC.
 
 
 0.821
ypdA_1
Sensor histidine kinase YpdA.
 
  
0.814
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.