STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdA_2Sensor histidine kinase YpdA. (417 aa)    
Predicted Functional Partners:
cheY_2
Chemotaxis protein CheY.
  
 0.966
lytR_3
Sensory transduction protein LytR.
 
  
 0.843
lytR_1
Sensory transduction protein LytR.
 
  
 0.842
lytR_2
Sensory transduction protein LytR.
 
  
 0.778
pduB
Propanediol utilization protein PduB.
 
  
 0.738
yvqK
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
   
 0.738
ACWI_25640
Phosphopantothenoylcysteine decarboxylase.
 
     0.711
ydaM_4
Putative diguanylate cyclase YdaM.
  
  
 0.661
ACWI_25670
Hypothetical protein.
 
   
 0.660
pduC
Propanediol dehydratase large subunit.
 
   
 0.652
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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