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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmLCarbon dioxide concentrating mechanism protein CcmL. (92 aa)    
Predicted Functional Partners:
pduA_2
Propanediol utilization protein PduA.
 
 
 0.991
pduA_1
Propanediol utilization protein PduA.
 
 
 
 0.989
ACWI_25710
BMC domain protein.
 
 
 0.988
hscA
Chaperone protein HscA.
 
  
 0.952
sucD
Succinate-semialdehyde dehydrogenase (acetylating).
 
  
 0.929
eutL
Ethanolamine utilization protein EutL.
 
  
 0.887
yvqK
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
     
 0.882
pduU
Propanediol utilization protein PduU.
 
   
 0.860
ACWI_25670
Hypothetical protein.
     
 0.839
pduV_1
Propanediol utilization protein PduV; Belongs to the EutP/PduV family.
 
   
 0.811
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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