Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
sigBRNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (186 aa)    
Predicted Functional Partners:
rsbW
Serine-protein kinase RsbW.
 
 
 0.978
ACWI_25800
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.954
fliN
Flagellar motor switch protein FliN.
  
  
 0.919
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
 
 0.878
flgB
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
 
 0.861
flgK
Flagellar hook-associated protein 1.
  
  
 0.856
ACWI_26250
Flagellar basal body rod modification protein.
  
  
 0.855
rsbT
Serine/threonine-protein kinase RsbT.
  
 
 0.847
ACWI_14730
Hypothetical protein.
  
 
 0.836
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.833
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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