tdcF protein (Acetobacterium wieringae) - STRING interaction network

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tdcF

Putative reactive intermediate deaminase TdcF. (127 aa)

Predicted Functional Partners:

tdcB

0.732

rph

0.684

tpiA_1

0.639

tpiA_2

0.639

ACWI_25950

0.632

glxK

0.620

rluD_1

0.605

pksJ

0.596

tyrB

0.574

fusA_1

0.569

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_25950	tdcB	ACWI_25950	ACWI_26770	YheO-like PAS domain protein.	L-threonine dehydratase catabolic TdcB; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	0.416
ACWI_25950	tdcF	ACWI_25950	ACWI_25940	YheO-like PAS domain protein.	Putative reactive intermediate deaminase TdcF.	0.632
fusA_1	pksJ	ACWI_25830	ACWI_26840	Elongation factor G.	Polyketide synthase PksJ.	0.711
fusA_1	tdcF	ACWI_25830	ACWI_25940	Elongation factor G.	Putative reactive intermediate deaminase TdcF.	0.569
glxK	tdcF	ACWI_35230	ACWI_25940	Glycerate kinase; Belongs to the glycerate kinase type-1 family.	Putative reactive intermediate deaminase TdcF.	0.620
pksJ	fusA_1	ACWI_26840	ACWI_25830	Polyketide synthase PksJ.	Elongation factor G.	0.711
pksJ	rluD_1	ACWI_26840	ACWI_18720	Polyketide synthase PksJ.	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.752
pksJ	tdcB	ACWI_26840	ACWI_26770	Polyketide synthase PksJ.	L-threonine dehydratase catabolic TdcB; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	0.729
pksJ	tdcF	ACWI_26840	ACWI_25940	Polyketide synthase PksJ.	Putative reactive intermediate deaminase TdcF.	0.596
pksJ	tpiA_1	ACWI_26840	ACWI_08100	Polyketide synthase PksJ.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.503
pksJ	tpiA_2	ACWI_26840	ACWI_34100	Polyketide synthase PksJ.	Triosephosphate isomerase.	0.503
pksJ	tyrB	ACWI_26840	ACWI_12030	Polyketide synthase PksJ.	Aromatic-amino-acid aminotransferase.	0.791
rluD_1	pksJ	ACWI_18720	ACWI_26840	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Polyketide synthase PksJ.	0.752
rluD_1	tdcF	ACWI_18720	ACWI_25940	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Putative reactive intermediate deaminase TdcF.	0.605
rluD_1	tpiA_1	ACWI_18720	ACWI_08100	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.490
rluD_1	tpiA_2	ACWI_18720	ACWI_34100	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Triosephosphate isomerase.	0.551
rph	tdcF	ACWI_22680	ACWI_25940	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Putative reactive intermediate deaminase TdcF.	0.684
tdcB	ACWI_25950	ACWI_26770	ACWI_25950	L-threonine dehydratase catabolic TdcB; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	YheO-like PAS domain protein.	0.416
tdcB	pksJ	ACWI_26770	ACWI_26840	L-threonine dehydratase catabolic TdcB; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	Polyketide synthase PksJ.	0.729
tdcB	tdcF	ACWI_26770	ACWI_25940	L-threonine dehydratase catabolic TdcB; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	Putative reactive intermediate deaminase TdcF.	0.732