STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttgRHTH-type transcriptional regulator TtgR. (222 aa)    
Predicted Functional Partners:
ymfD
Bacillibactin exporter.
 
   
 0.747
ACWI_06190
Hypothetical protein.
  
     0.740
ACWI_06040
Hypothetical protein.
  
   
 0.728
ACWI_25780
YtxH-like protein.
  
     0.719
ACWI_25300
Hypothetical protein.
  
     0.689
ACWI_31560
Hypothetical protein.
  
     0.656
ACWI_12730
Arylsulfotransferase (ASST).
  
   
 0.653
bchB
Light-independent protochlorophyllide reductase subunit B.
  
     0.648
ACWI_07180
Putative redox-active protein; C_GCAxxG_C_C.
  
   
 0.642
exuT_1
Hexuronate transporter.
  
   
 0.639
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.