mepM_4 protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mepM_4

Murein DD-endopeptidase MepM. (389 aa)

Predicted Functional Partners:

ftsX

0.898

ftsE

0.852

pbpF

0.738

ctpB

0.738

fliN

0.708

spoVD

0.553

mltG

0.500

fliM

0.464

murC

0.460

pksJ

0.459

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ctpB	ftsE	ACWI_26090	ACWI_26060	Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	0.525
ctpB	ftsX	ACWI_26090	ACWI_26070	Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.585
ctpB	mepM_4	ACWI_26090	ACWI_26080	Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.	Murein DD-endopeptidase MepM.	0.738
fliM	fliN	ACWI_26310	ACWI_26320	Flagellar motor switch protein FliM.	Flagellar motor switch protein FliN.	0.999
fliM	mepM_4	ACWI_26310	ACWI_26080	Flagellar motor switch protein FliM.	Murein DD-endopeptidase MepM.	0.464
fliN	fliM	ACWI_26320	ACWI_26310	Flagellar motor switch protein FliN.	Flagellar motor switch protein FliM.	0.999
fliN	ftsX	ACWI_26320	ACWI_26070	Flagellar motor switch protein FliN.	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.414
fliN	mepM_4	ACWI_26320	ACWI_26080	Flagellar motor switch protein FliN.	Murein DD-endopeptidase MepM.	0.708
fliN	mltG	ACWI_26320	ACWI_17440	Flagellar motor switch protein FliN.	Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.546
ftsE	ctpB	ACWI_26060	ACWI_26090	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.	0.525
ftsE	ftsX	ACWI_26060	ACWI_26070	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.999
ftsE	mepM_4	ACWI_26060	ACWI_26080	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	Murein DD-endopeptidase MepM.	0.852
ftsE	mltG	ACWI_26060	ACWI_17440	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.461
ftsE	pbpF	ACWI_26060	ACWI_18730	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	Penicillin-binding protein 1F.	0.415
ftsE	spoVD	ACWI_26060	ACWI_17800	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	Stage V sporulation protein D.	0.548
ftsX	ctpB	ACWI_26070	ACWI_26090	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.	0.585
ftsX	fliN	ACWI_26070	ACWI_26320	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Flagellar motor switch protein FliN.	0.414
ftsX	ftsE	ACWI_26070	ACWI_26060	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	0.999
ftsX	mepM_4	ACWI_26070	ACWI_26080	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Murein DD-endopeptidase MepM.	0.898
ftsX	mltG	ACWI_26070	ACWI_17440	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.494