STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbF_1Glucose-1-phosphate cytidylyltransferase. (348 aa)    
Predicted Functional Partners:
rmd
GDP-6-deoxy-D-mannose reductase.
 
 
 0.965
neuA
N-acylneuraminate cytidylyltransferase.
  
 0.956
legI
N,N'-diacetyllegionaminic acid synthase.
 
  
 0.955
legG
GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolyzing).
 
   
 0.950
ACWI_26550
Hypothetical protein.
 
   0.884
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.790
fmt_2
methionyl-tRNA formyltransferase.
       0.783
ACWI_26540
Hypothetical protein.
       0.738
rfbJ
CDP-abequose synthase.
 
 
 0.700
pglE
UDP-N-acetylbacillosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.654
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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