Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
copA_3Copper-exporting P-type ATPase A. (454 aa)    
Predicted Functional Partners:
copA_2
Copper-exporting P-type ATPase A.
 
 
0.936
copA_1
Copper-exporting P-type ATPase A.
  
 
 0.854
cadA
Cadmium, zinc and cobalt-transporting ATPase.
  
 
 0.854
ACWI_27280
Hypothetical protein.
 
    
0.834
baeS
Signal transduction histidine-protein kinase BaeS.
 
     0.830
ziaA
Zinc-transporting ATPase.
  
 
 0.786
ACWI_19720
EcsC protein family protein.
  
 
 0.786
copB
Copper-exporting P-type ATPase B.
  
 
 0.786
copZ
Copper chaperone CopZ.
 
     0.679
ttcA_2
tRNA 2-thiocytidine biosynthesis protein TtcA; Belongs to the TtcA family.
  
  
 0.626
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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