Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpfG_13Cyclic di-GMP phosphodiesterase response regulator RpfG. (432 aa)    
Predicted Functional Partners:
pleD_5
Response regulator PleD.
 
     0.845
ydaM_9
Putative diguanylate cyclase YdaM.
 
 
   0.778
cph2_14
Phytochrome-like protein cph2.
 
   
 0.763
ydaM_7
Putative diguanylate cyclase YdaM.
 
 
 
 0.671
adrA_3
Putative diguanylate cyclase AdrA.
 
   
 0.661
ydaM_8
Putative diguanylate cyclase YdaM.
 
 
 
 0.614
adrA_4
Putative diguanylate cyclase AdrA.
 
 
   0.551
ydaM_3
Putative diguanylate cyclase YdaM.
 
 
   0.498
barA_2
Signal transduction histidine-protein kinase BarA.
 
   
 0.494
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
 
   
 0.470
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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