STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_13Cyclic di-GMP phosphodiesterase response regulator RpfG. (432 aa)    
Predicted Functional Partners:
pleD_5
Response regulator PleD.
 
     0.846
ydaM_9
Putative diguanylate cyclase YdaM.
 
 
  0.807
cph2_14
Phytochrome-like protein cph2.
 
  
 0.782
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.767
prkC_1
Serine/threonine-protein kinase PrkC.
  
 
 0.764
ydaM_7
Putative diguanylate cyclase YdaM.
 
 
 0.713
yedQ
Putative diguanylate cyclase YedQ.
 0.671
adrA_3
Putative diguanylate cyclase AdrA.
 
   
 0.668
ydaM_8
Putative diguanylate cyclase YdaM.
 
 
 0.664
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
0.631
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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