ACWI_27650 protein (Acetobacterium wieringae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACWI_27650

Putative transcriptional regulatory protein. (245 aa)

Predicted Functional Partners:

rplS

0.904

rplQ

0.878

rpsP

0.855

aspS

0.855

tyrS

0.825

rpmA

0.821

misCA

0.811

rplM

0.792

rplU

0.788

ACWI_27640

0.773

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_27640	ACWI_27650	ACWI_27640	ACWI_27650	Putative peptidoglycan binding domain protein.	Putative transcriptional regulatory protein.	0.773
ACWI_27650	ACWI_27640	ACWI_27650	ACWI_27640	Putative transcriptional regulatory protein.	Putative peptidoglycan binding domain protein.	0.773
ACWI_27650	aspS	ACWI_27650	ACWI_18960	Putative transcriptional regulatory protein.	aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	0.855
ACWI_27650	misCA	ACWI_27650	ACWI_13230	Putative transcriptional regulatory protein.	Membrane protein insertase MisCA precursor.	0.811
ACWI_27650	rplM	ACWI_27650	ACWI_05990	Putative transcriptional regulatory protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.792
ACWI_27650	rplQ	ACWI_27650	ACWI_05940	Putative transcriptional regulatory protein.	50S ribosomal protein L17.	0.878
ACWI_27650	rplS	ACWI_27650	ACWI_00350	Putative transcriptional regulatory protein.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.904
ACWI_27650	rplU	ACWI_27650	ACWI_21540	Putative transcriptional regulatory protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.788
ACWI_27650	rpmA	ACWI_27650	ACWI_21520	Putative transcriptional regulatory protein.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.821
ACWI_27650	rpsP	ACWI_27650	ACWI_00310	Putative transcriptional regulatory protein.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.855
ACWI_27650	tyrS	ACWI_27650	ACWI_05560	Putative transcriptional regulatory protein.	tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.	0.825
aspS	ACWI_27650	ACWI_18960	ACWI_27650	aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	Putative transcriptional regulatory protein.	0.855
aspS	misCA	ACWI_18960	ACWI_13230	aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	Membrane protein insertase MisCA precursor.	0.597
aspS	rplM	ACWI_18960	ACWI_05990	aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.548
aspS	rpsP	ACWI_18960	ACWI_00310	aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.474
aspS	tyrS	ACWI_18960	ACWI_05560	aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.	0.649
misCA	ACWI_27650	ACWI_13230	ACWI_27650	Membrane protein insertase MisCA precursor.	Putative transcriptional regulatory protein.	0.811
misCA	aspS	ACWI_13230	ACWI_18960	Membrane protein insertase MisCA precursor.	aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	0.597
misCA	rplM	ACWI_13230	ACWI_05990	Membrane protein insertase MisCA precursor.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.865
misCA	rplQ	ACWI_13230	ACWI_05940	Membrane protein insertase MisCA precursor.	50S ribosomal protein L17.	0.924