ACWI_27780 protein (Acetobacterium wieringae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACWI_27780

5'-nucleotidase. (217 aa)

Predicted Functional Partners:

gph

0.972

ppaX_1

0.926

hprA

0.903

nudF

0.895

ACWI_27770

0.784

rbr1

0.568

moaA_2

0.544

moaA_5

0.544

pflA_2

0.534

ACWI_26250

0.527

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_26250	ACWI_27780	ACWI_26250	ACWI_27780	Flagellar basal body rod modification protein.	5'-nucleotidase.	0.527
ACWI_26250	gph	ACWI_26250	ACWI_11180	Flagellar basal body rod modification protein.	Phosphoglycolate phosphatase.	0.527
ACWI_26250	ppaX_1	ACWI_26250	ACWI_07420	Flagellar basal body rod modification protein.	Pyrophosphatase PpaX.	0.527
ACWI_27770	ACWI_27780	ACWI_27770	ACWI_27780	Hypothetical protein.	5'-nucleotidase.	0.784
ACWI_27770	rbr1	ACWI_27770	ACWI_27760	Hypothetical protein.	Rubrerythrin-1.	0.589
ACWI_27780	ACWI_26250	ACWI_27780	ACWI_26250	5'-nucleotidase.	Flagellar basal body rod modification protein.	0.527
ACWI_27780	ACWI_27770	ACWI_27780	ACWI_27770	5'-nucleotidase.	Hypothetical protein.	0.784
ACWI_27780	gph	ACWI_27780	ACWI_11180	5'-nucleotidase.	Phosphoglycolate phosphatase.	0.972
ACWI_27780	hprA	ACWI_27780	ACWI_20230	5'-nucleotidase.	Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.903
ACWI_27780	moaA_2	ACWI_27780	ACWI_15260	5'-nucleotidase.	Cyclic pyranopterin monophosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.	0.544
ACWI_27780	moaA_5	ACWI_27780	ACWI_35510	5'-nucleotidase.	Cyclic pyranopterin monophosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.	0.544
ACWI_27780	nudF	ACWI_27780	ACWI_17710	5'-nucleotidase.	ADP-ribose pyrophosphatase.	0.895
ACWI_27780	pflA_2	ACWI_27780	ACWI_15750	5'-nucleotidase.	Pyruvate formate-lyase 1-activating enzyme; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.534
ACWI_27780	ppaX_1	ACWI_27780	ACWI_07420	5'-nucleotidase.	Pyrophosphatase PpaX.	0.926
ACWI_27780	rbr1	ACWI_27780	ACWI_27760	5'-nucleotidase.	Rubrerythrin-1.	0.568
gph	ACWI_26250	ACWI_11180	ACWI_26250	Phosphoglycolate phosphatase.	Flagellar basal body rod modification protein.	0.527
gph	ACWI_27780	ACWI_11180	ACWI_27780	Phosphoglycolate phosphatase.	5'-nucleotidase.	0.972
gph	hprA	ACWI_11180	ACWI_20230	Phosphoglycolate phosphatase.	Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.903
gph	moaA_2	ACWI_11180	ACWI_15260	Phosphoglycolate phosphatase.	Cyclic pyranopterin monophosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.	0.544
gph	moaA_5	ACWI_11180	ACWI_35510	Phosphoglycolate phosphatase.	Cyclic pyranopterin monophosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.	0.544