Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcmprotein-L-isoaspartate O-methyltransferase. (200 aa)    
Predicted Functional Partners:
qorB
Quinone oxidoreductase 2.
   
 
 0.847
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
 
 0.665
hndC_2
NADP-reducing hydrogenase subunit HndC.
  
 
 0.665
ACWI_09310
Hypothetical protein.
  
   0.660
ACWI_32710
Hypothetical protein.
  
   0.660
fliG
Flagellar motor switch protein FliG.
   
   0.657
ydcP_1
Putative protease YdcP precursor.
  
   0.655
ydcP_2
Putative protease YdcP precursor.
  
   0.655
ACWI_28250
Ferredoxin.
       0.648
nuoI
NADH-quinone oxidoreductase subunit I.
  
   0.641
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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