STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_3Putative ABC transporter ATP-binding protein YbhF. (243 aa)    
Predicted Functional Partners:
ybhR_2
Inner membrane transport permease YbhR.
  
 0.969
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
 
    
0.878
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
    
0.849
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
    
0.769
ACWI_24710
ABC-2 family transporter protein.
  
 
 0.729
ACWI_24700
ABC-2 family transporter protein.
  
 
 0.654
ACWI_28440
ABC-2 family transporter protein.
  
 
 0.653
macB_6
Macrolide export ATP-binding/permease protein MacB.
 
  
0.634
ytrA_3
HTH-type transcriptional repressor YtrA.
  
  
 0.625
atpC_2
ATP synthase epsilon chain, sodium ion specific; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.551
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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