Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
minD_1Septum site-determining protein MinD. (383 aa)    
Predicted Functional Partners:
ACWI_29540
Putative conjugal transfer proteinc.
 
 0.996
ACWI_29530
Bacterial type II secretion system protein F domain protein.
 
  
 0.992
ACWI_29560
SAF domain protein.
 
 
  0.991
ACWI_29520
Bacterial type II secretion system protein F domain protein.
 
 
 0.990
ACWI_29510
Hypothetical protein.
 
     0.899
ACWI_29580
TadE-like protein.
 
   
 0.888
ACWI_29570
Hypothetical protein.
 
   
 0.885
fliN
Flagellar motor switch protein FliN.
  
  
 0.851
vnfA_1
Nitrogen fixation protein VnfA.
  
 
 0.797
cph2_6
Phytochrome-like protein cph2.
  
 
 0.797
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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