Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_29650Hypothetical protein. (185 aa)    
Predicted Functional Partners:
ACWI_29640
Hypothetical protein.
 
     0.888
ACWI_23890
Flavodoxin.
 
     0.795
purL
Phosphoribosylformylglycinamidine synthase.
 
  
 0.784
ACWI_14590
Flavodoxin.
 
     0.781
aspA
Aspartate ammonia-lyase.
   
  
 0.625
ACWI_18370
FeoA domain protein.
 
    0.596
ACWI_15170
Glyceraldehyde-3-phosphate dehydrogenase.
 
  
 0.595
ACWI_27050
Hypothetical protein.
 
     0.542
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.527
sucD
Succinate-semialdehyde dehydrogenase (acetylating).
  
  
 0.507
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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