mntR protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mntR

Transcriptional regulator MntR. (124 aa)

Predicted Functional Partners:

rimO_3

0.773

cobS

0.705

ACWI_30250

0.693

metN_1

0.671

metN_2

0.671

metN_3

0.671

ACWI_11490

0.599

znuB

0.567

sipT

0.566

znuA

0.559

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_11490	mntR	ACWI_11490	ACWI_30260	Hypothetical protein.	Transcriptional regulator MntR.	0.599
ACWI_30250	cobS	ACWI_30250	ACWI_30280	Putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	0.604
ACWI_30250	mntR	ACWI_30250	ACWI_30260	Putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Transcriptional regulator MntR.	0.693
ACWI_30250	rimO_3	ACWI_30250	ACWI_30270	Putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Ribosomal protein S12 methylthiotransferase RimO.	0.706
cobS	ACWI_30250	ACWI_30280	ACWI_30250	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	Putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.604
cobS	mntR	ACWI_30280	ACWI_30260	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	Transcriptional regulator MntR.	0.705
cobS	rimO_3	ACWI_30280	ACWI_30270	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	Ribosomal protein S12 methylthiotransferase RimO.	0.681
metN_1	metN_2	ACWI_22550	ACWI_26940	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.909
metN_1	mntR	ACWI_22550	ACWI_30260	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Transcriptional regulator MntR.	0.671
metN_2	metN_1	ACWI_26940	ACWI_22550	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.909
metN_2	mntR	ACWI_26940	ACWI_30260	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Transcriptional regulator MntR.	0.671
metN_3	mntR	ACWI_35650	ACWI_30260	Methionine import ATP-binding protein MetN.	Transcriptional regulator MntR.	0.671
mntR	ACWI_11490	ACWI_30260	ACWI_11490	Transcriptional regulator MntR.	Hypothetical protein.	0.599
mntR	ACWI_30250	ACWI_30260	ACWI_30250	Transcriptional regulator MntR.	Putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.693
mntR	cobS	ACWI_30260	ACWI_30280	Transcriptional regulator MntR.	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	0.705
mntR	metN_1	ACWI_30260	ACWI_22550	Transcriptional regulator MntR.	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.671
mntR	metN_2	ACWI_30260	ACWI_26940	Transcriptional regulator MntR.	Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.671
mntR	metN_3	ACWI_30260	ACWI_35650	Transcriptional regulator MntR.	Methionine import ATP-binding protein MetN.	0.671
mntR	rimO_3	ACWI_30260	ACWI_30270	Transcriptional regulator MntR.	Ribosomal protein S12 methylthiotransferase RimO.	0.773
mntR	sipT	ACWI_30260	ACWI_00360	Transcriptional regulator MntR.	Signal peptidase I T; Belongs to the peptidase S26 family.	0.566