Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arlR_3Response regulator ArlR. (134 aa)    
Predicted Functional Partners:
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
0.946
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.941
cheA_4
Chemotaxis protein CheA.
  
 0.940
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 0.935
cheA_1
Chemotaxis protein CheA.
  
 0.928
cheA_2
Chemotaxis protein CheA.
  
 0.928
cheX
CheY-P phosphatase CheX.
  
 
 0.920
fliN
Flagellar motor switch protein FliN.
   
 0.920
cheY_3
Chemotaxis protein CheY.
  
0.916
cheC
CheY-P phosphatase CheC.
     
 0.902
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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