Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACWI_09780 | barA_1 | ACWI_09780 | ACWI_15680 | Hypothetical protein. | Signal transduction histidine-protein kinase BarA. | 0.857 |
ACWI_09780 | barA_2 | ACWI_09780 | ACWI_16170 | Hypothetical protein. | Signal transduction histidine-protein kinase BarA. | 0.858 |
ACWI_09780 | cloSI | ACWI_09780 | ACWI_30930 | Hypothetical protein. | Clostripain precursor. | 0.786 |
ACWI_09780 | luxQ_1 | ACWI_09780 | ACWI_30060 | Hypothetical protein. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.770 |
ACWI_09780 | spoVD | ACWI_09780 | ACWI_17800 | Hypothetical protein. | Stage V sporulation protein D. | 0.595 |
ACWI_09780 | ydaM_4 | ACWI_09780 | ACWI_09220 | Hypothetical protein. | Putative diguanylate cyclase YdaM. | 0.605 |
barA_1 | ACWI_09780 | ACWI_15680 | ACWI_09780 | Signal transduction histidine-protein kinase BarA. | Hypothetical protein. | 0.857 |
barA_1 | barA_2 | ACWI_15680 | ACWI_16170 | Signal transduction histidine-protein kinase BarA. | Signal transduction histidine-protein kinase BarA. | 0.996 |
barA_1 | cloSI | ACWI_15680 | ACWI_30930 | Signal transduction histidine-protein kinase BarA. | Clostripain precursor. | 0.814 |
barA_1 | gltB_1 | ACWI_15680 | ACWI_09090 | Signal transduction histidine-protein kinase BarA. | Ferredoxin-dependent glutamate synthase 1. | 0.646 |
barA_1 | luxQ_1 | ACWI_15680 | ACWI_30060 | Signal transduction histidine-protein kinase BarA. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.995 |
barA_1 | prkC_1 | ACWI_15680 | ACWI_14540 | Signal transduction histidine-protein kinase BarA. | Serine/threonine-protein kinase PrkC. | 0.999 |
barA_1 | prkC_2 | ACWI_15680 | ACWI_19160 | Signal transduction histidine-protein kinase BarA. | Serine/threonine-protein kinase PrkC. | 0.926 |
barA_1 | prkC_3 | ACWI_15680 | ACWI_21630 | Signal transduction histidine-protein kinase BarA. | Serine/threonine-protein kinase PrkC. | 0.857 |
barA_1 | spoVD | ACWI_15680 | ACWI_17800 | Signal transduction histidine-protein kinase BarA. | Stage V sporulation protein D. | 0.597 |
barA_1 | ydaM_4 | ACWI_15680 | ACWI_09220 | Signal transduction histidine-protein kinase BarA. | Putative diguanylate cyclase YdaM. | 0.999 |
barA_2 | ACWI_09780 | ACWI_16170 | ACWI_09780 | Signal transduction histidine-protein kinase BarA. | Hypothetical protein. | 0.858 |
barA_2 | barA_1 | ACWI_16170 | ACWI_15680 | Signal transduction histidine-protein kinase BarA. | Signal transduction histidine-protein kinase BarA. | 0.996 |
barA_2 | cloSI | ACWI_16170 | ACWI_30930 | Signal transduction histidine-protein kinase BarA. | Clostripain precursor. | 0.843 |
barA_2 | gltB_1 | ACWI_16170 | ACWI_09090 | Signal transduction histidine-protein kinase BarA. | Ferredoxin-dependent glutamate synthase 1. | 0.743 |
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