STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_5Tyrosine recombinase XerD. (324 aa)    
Predicted Functional Partners:
xerD_6
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
     0.954
xerC_2
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
 
     0.946
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.775
xerD_7
Tyrosine recombinase XerD.
  
     0.775
xerD_1
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.772
xerD_9
Tyrosine recombinase XerD.
  
     0.771
xerC_1
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.669
xerD_2
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.539
prs_2
Ribose-phosphate pyrophosphokinase.
   
    0.507
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.504
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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