STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_5Tyrosine recombinase XerD. (324 aa)    
Predicted Functional Partners:
xerD_6
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
     0.954
xerC_2
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
 
     0.946
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.775
xerD_7
Tyrosine recombinase XerD.
 
     0.775
xerD_1
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.772
xerD_9
Tyrosine recombinase XerD.
  
     0.771
xerC_1
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.669
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.655
xerD_2
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.539
hslV
ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.524
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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