STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanYB_2D-alanyl-D-alanine carboxypeptidase. (277 aa)    
Predicted Functional Partners:
spoVD
Stage V sporulation protein D.
     
 0.773
dacB
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
     
 0.746
pbpF
Penicillin-binding protein 1F.
     
 0.745
ddlA
D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.543
ACWI_24900
Clostridial hydrophobic W.
  
 
  0.493
prkC_2
Serine/threonine-protein kinase PrkC.
     
 0.453
ACWI_30730
Hypothetical protein.
     
 0.451
ACWI_29890
Hypothetical protein.
     
 0.445
cloSI
Clostripain precursor.
     
 0.445
ACWI_32120
Putative RNA-binding protein.
       0.436
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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