Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_33550Hypothetical protein. (365 aa)    
Predicted Functional Partners:
ACWI_33560
Hypothetical protein.
     0.991
ACWI_00050
Transposase DDE domain protein.
  
   
 0.547
pksJ
Polyketide synthase PksJ.
     
 0.512
ACWI_34700
Hypothetical protein.
  
   
 0.500
ACWI_34650
Hypothetical protein.
  
   
 0.432
rsmD
Ribosomal RNA small subunit methyltransferase D.
  
    0.428
ACWI_34710
Transposase.
  
   
 0.414
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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