Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_33960Sigma-70, region 4. (144 aa)    
Predicted Functional Partners:
rapA
RNA polymerase-associated protein RapA.
 
    0.875
ACWI_33970
Hypothetical protein.
       0.799
rsbT
Serine/threonine-protein kinase RsbT.
  
 
 0.794
ACWI_14730
Hypothetical protein.
  
 
 0.794
rsbW
Serine-protein kinase RsbW.
  
 
 0.794
fliN
Flagellar motor switch protein FliN.
  
  
 0.771
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
 
 0.760
ACWI_33920
HNH endonuclease.
 
     0.758
polA_3
DNA polymerase I, thermostable.
 
     0.753
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.747
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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