STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjmB_2Putative symporter YjmB. (464 aa)    
Predicted Functional Partners:
ACWI_20360
Hypothetical protein.
  
    0.765
hemE_2
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
    0.692
ACWI_11870
Major facilitator superfamily protein.
  
   
 0.681
ACWI_34940
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
    0.665
ACWI_29670
Major facilitator superfamily protein.
  
  
 0.656
ACWI_29050
Major facilitator superfamily protein.
  
  
 0.649
ACWI_16100
Hypothetical protein.
  
    0.643
ACWI_29030
Major facilitator superfamily protein.
  
   
 0.631
ACWI_32120
Putative RNA-binding protein.
  
     0.606
ACWI_11070
Hypothetical protein.
  
     0.536
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.